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Chronux
Chronux is an open-source software package developed for the loading, visualization and analysis of a variety of modalities / formats of neurobiological time series data. Usage of this tool enables neuroscientists to perform a variety of analysis on multichannel electrophysiological data such as LFP (local field potentials), EEG, MEG, Neuronal spike times and also on spatiotemporal data such as FMRI and dynamic optical imaging data. The software consists of a set of MATLAB routines interfaced with C libraries that can be used to perform the tasks that constitute a typical study of neurobiological data. These include local regression and smoothing, spike sorting and spectral analysis. The package also includes some GUIs for time series visualization and analysis. Chronux is GNU GPL v2 licensed〔http://chronux.org/downloads/chronux/chronux/manual.pdf〕 (and MATLAB is proprietary). ==History== From 1996 to 2001, the Marine Biological Laboratory (MBL) at Woods Hole, Massachusetts, USA hosted a workshop on the analysis of neural data. This workshop then evolved into the special topics course on neuroinformatics which is held at the MBL in the last two weeks of August every year. The popularity of these pedagogical efforts and the need for wider dissemination of sophisticated time-series analysis tools in the wider neuroscience community led the Mitra Lab at Cold Spring Harbor Laboratory to initiate an NIH funded effort to develop software tools for neural data analysis in the form of the Chronux package. Chronux is the result of efforts of a number of people, the chief among whom are Hemant Bokil, Peter Andrews, Samar Mehta, Ken Harris, Catherine Loader, Partha Mitra, Hiren Maniar, Ravi Shukla, Ramesh Yadav, Hariharan Nalatore and Sumanjit Kaur. Important contributions were also made by Murray Jarvis, Bijan Pesaran and S.Gopinath. Chronux welcome contributions from interested individuals.
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