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The Protein Property Prediction and Testing Database (PPT-DB) is a collection of protein property databases for over 20 different protein properties including secondary structure, trans-membrane helices and beta barrels, accessible surface area, signal peptides, and more. PPT-DB is published in 2008. Its protocol is available via ( PPT-DB website ) 〔( David S. Wishart, David Arndt, Mark Berjanskii, An Chi Guo, Yi Shi, Savita Shrivastava, Jianjun Zhou, You Zhou and Guohui Lin: PPT-DB: the protein property prediction and testing database. Nucleic Acids Research 2008 36(Database issue):D222-D229. ) 〕 ==Database== # All Properties # 2° Structure (cytoplasmic) # EVA 2o Structure Test Set # 2° Structure (membrane helix) # TMH Benchmark Test Set # 2° Structure (membrane barrel) # 2° Structure (cytoplasmic) # Beta Turns # Coiled-coil # Edge/Central Beta Strands # Beta Hairpins # Disulfide Bonds # SPdb (Eukaryotic) # SPdb (Gram+) # SPdb (Gram-) # Signal Peptide (Eukaryotic) # Signal Peptide (Gram+) # Signal Peptide (Gram-) # Accessible Surface Area (%) # Accessible Surface Area (Integerized) # B-factor (Real value) # B-factor (Integerized) # RMSF (Real value) # RMSF (Integerized) # Order Parameter (Calculated) # Order Parameter (Integerized) # Contact Order # Folding Rate # 3D Folding Decoys # Amyloidogenic Proteins 抄文引用元・出典: フリー百科事典『 ウィキペディア（Wikipedia）』 ■ウィキペディアで「PPT-DB」の詳細全文を読む スポンサード リンク
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