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Vaa3D (Vaa3D ) (in Chinese ‘挖三维’) is an Open Source visualization and analysis software suite created mainly by (Hanchuan Peng ) and his team at (Janelia Research Campus, HHMI ) and (Allen Institute for Brain Science ). The software performs 3D, 4D and 5D rendering and analysis of very large image data sets, especially those generated using various modern microscopy methods, and associated 3D surface objects. This software has been used in several large neuroscience initiatives and a number of applications in other domains. In a recent Nature Methods review article, it has been viewed as one of the leading Open Source software suites in the related research fields. It has also been used in several other award-winning work, e.g. (mapping of dragonfly neurons ) and (large-scale visualization of cellular data ). ==Creation== Vaa3D was created in 2007 to tackle the large-scale brain mapping project at Janelia Farm of Howard Hughes Medical Institute. The initial goal was to quickly visualize any of the tens of thousands of large 3D laser scanning microscopy image stacks of fruit fly brains, each with a few gigabytes in volume. Low level OpenGL based 3D rendering was developed to provide as fast possible direct rendering of multi-dimensional image stacks. C/C++ and Qt were used to create cross-platform compatibility so the software can run on Mac, Linux and Windows. Strong functions for synchronizing multiple 2D/3D/4D/5D rendered views, generating global and local 3D viewers, and virtual finger, allow Vaa3D be able to streamline a number of operations for complicated brain science tasks, e.g. brain comparison and neuron reconstruction. Vaa3D also provides an extensible plugin interface that currently host many dozens of open source plugins contributed by researchers worldwide.
抄文引用元・出典: フリー百科事典『 ウィキペディア(Wikipedia)』 ■ウィキペディアで「Vaa3D」の詳細全文を読む
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